Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_04587 | Not Available | Negative | 4351365 - 4351715 | 13034.6 |
| succinate-coa ligase, alpha subunit | HMPREF3040_04588 | Not Available | Negative | 4351760 - 4352629 | 29779.3 |
| succinate-coa ligase, beta subunit | HMPREF3040_04589 | Not Available | Negative | 4352629 - 4353795 | 41395.1 |
| dihydrolipoyllysine-residue succinyltransferase, e2 component of oxoglutarate dehydrogenase complex | HMPREF3040_04590 | Not Available | Negative | 4354070 - 4355287 | 44027.1 |
| oxoglutarate dehydrogenase (succinyl-transferring), e1 component | HMPREF3040_04591 | Not Available | Negative | 4355302 - 4358103 | 105068.0 |
| succinate dehydrogenase iron-sulfur subunit | HMPREF3040_04592 | Not Available | Negative | 4358453 - 4359169 | 26771.4 |
| succinate dehydrogenase, flavoprotein subunit | HMPREF3040_04593 | Not Available | Negative | 4359185 - 4360951 | 64409.6 |
| succinate dehydrogenase, hydrophobic membrane anchor protein | HMPREF3040_04594 | Not Available | Negative | 4360951 - 4361298 | 12868.3 |
| succinate dehydrogenase, cytochrome b556 subunit | HMPREF3040_04595 | Not Available | Negative | 4361292 - 4361696 | 14948.9 |
| hypothetical protein | HMPREF3040_04596 | Not Available | Negative | 4362165 - 4362341 | 6821.62 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





