Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_04433 | Not Available | Negative | 4237173 - 4237805 | 24032.4 |
| accessory protein fdhd, formate dehydrogenase family | HMPREF3040_04434 | Not Available | Negative | 4237885 - 4238718 | 30533.8 |
| tat pathway signal sequence domain protein | HMPREF3040_04435 | Not Available | Positive | 4238912 - 4239499 | 21369.5 |
| putative formate dehydrogenase, alpha subunit | HMPREF3040_04436 | Not Available | Positive | 4239548 - 4241466 | 71328.3 |
| molybdopterin dinucleotide binding domain protein | HMPREF3040_04437 | Not Available | Positive | 4241467 - 4241991 | 19234.9 |
| formate dehydrogenase, beta subunit | HMPREF3040_04438 | Not Available | Positive | 4242004 - 4242906 | 33102.1 |
| formate dehydrogenase, gamma subunit | HMPREF3040_04439 | Not Available | Positive | 4242903 - 4243538 | 24607.7 |
| formate dehydrogenase accessory protein fdhe | HMPREF3040_04440 | Not Available | Positive | 4243535 - 4244464 | 34720.6 |
| toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein | HMPREF3040_04441 | Not Available | Negative | 4244646 - 4244888 | 9267.91 |
| ribbon-helix-helix protein, copg family | HMPREF3040_04442 | Not Available | Negative | 4245107 - 4245352 | 9382.54 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





