Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_04332 | Not Available | Positive | 4143332 - 4143555 | 8986.68 |
| integrase core domain protein | HMPREF3040_04333 | Not Available | Positive | 4143636 - 4144154 | 19509.0 |
| hypothetical protein | HMPREF3040_04334 | Not Available | Negative | 4144365 - 4144652 | 10775.1 |
| faea-like protein | HMPREF3040_04335 | Not Available | Negative | 4144718 - 4144951 | 8768.53 |
| hypothetical protein | HMPREF3040_04336 | Not Available | Positive | 4144988 - 4145161 | 6976.88 |
| major pilu subunit operon regulatory protein papb | HMPREF3040_04337 | Not Available | Positive | 4145356 - 4145670 | 11696.2 |
| prs fimbrial major pilin protein | HMPREF3040_04338 | Not Available | Positive | 4145856 - 4146413 | 18918.3 |
| pap fimbrial minor pilin protein | HMPREF3040_04339 | Not Available | Positive | 4146570 - 4147070 | 18526.9 |
| outer membrane usher protein papc | HMPREF3040_04340 | Not Available | Positive | 4147129 - 4149639 | 91545.0 |
| gram-negative pili assembly chaperone domain protein | HMPREF3040_04341 | Not Available | Positive | 4149710 - 4150444 | 27420.1 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





