Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-lactate dehydrogenase | HMPREF3040_04271 | Not Available | Negative | 4069644 - 4071350 | 64310.6 |
| glycosyl hydrolase family 3 protein | HMPREF3040_04272 | Not Available | Positive | 4071483 - 4073852 | 86181.0 |
| hypothetical protein | HMPREF3040_04273 | Not Available | Positive | 4073839 - 4073970 | 5011.46 |
| abc transporter, substrate-binding protein, qat family | HMPREF3040_04274 | Not Available | Positive | 4074001 - 4074918 | 32500.9 |
| abc transporter, permease protein | HMPREF3040_04275 | Not Available | Positive | 4074925 - 4076082 | 41212.3 |
| choline abc transporter, atp-binding protein opuba family protein | HMPREF3040_04276 | Not Available | Positive | 4076075 - 4077001 | 34440.7 |
| abc transporter, permease protein | HMPREF3040_04277 | Not Available | Positive | 4077006 - 4077737 | 25600.3 |
| transcriptional regulator, merr family | HMPREF3040_04278 | Not Available | Negative | 4077885 - 4078616 | 28056.8 |
| hypothetical protein | HMPREF3040_04279 | Not Available | Negative | 4078621 - 4078749 | 4749.81 |
| lyts/yhck-type transmembrane receptor domain protein | HMPREF3040_04280 | Not Available | Positive | 4078838 - 4080523 | 62112.4 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





