Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_04220 | Not Available | Negative | 4020194 - 4020673 | 18154.1 |
| transposase | HMPREF3040_04221 | Not Available | Negative | 4020673 - 4021020 | 13481.0 |
| hypothetical protein | HMPREF3040_04222 | Not Available | Positive | 4021118 - 4021384 | 10295.6 |
| trka protein | HMPREF3040_04224 | Not Available | Negative | 4021559 - 4023244 | 60355.1 |
| hypothetical protein | HMPREF3040_04225 | Not Available | Positive | 4023595 - 4023891 | 11085.9 |
| glutaredoxin, grxa family | HMPREF3040_04226 | Not Available | Negative | 4023921 - 4024193 | 10381.3 |
| hypothetical protein | HMPREF3040_04227 | Not Available | Positive | 4024338 - 4024625 | 10493.4 |
| oxygen-insensitive nadph nitroreductase | HMPREF3040_04228 | Not Available | Positive | 4024609 - 4025331 | 26851.1 |
| alpha-l-glutamate ligase, rimk family | HMPREF3040_04229 | Not Available | Positive | 4025506 - 4026294 | 28122.1 |
| hypothetical protein | HMPREF3040_04230 | Not Available | Positive | 4026382 - 4026858 | 17667.1 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





