Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding helix-turn-helix protein | HMPREF3040_04190 | Not Available | Positive | 3996164 - 3996700 | 19714.4 |
| peptidase, u32 family | HMPREF3040_04191 | Not Available | Positive | 3996731 - 3998734 | 74348.2 |
| hypothetical protein | HMPREF3040_04192 | Not Available | Negative | 3998826 - 3999056 | 8709.32 |
| toxin-antitoxin system, toxin component, hica family | HMPREF3040_04193 | Not Available | Positive | 3999278 - 3999454 | 6757.23 |
| dna-binding helix-turn-helix protein | HMPREF3040_04194 | Not Available | Positive | 3999479 - 3999916 | 16111.6 |
| transcriptional regulator, gntr family | HMPREF3040_04195 | Not Available | Positive | 3999995 - 4001401 | 52746.8 |
| abc transporter, solute-binding protein | HMPREF3040_04196 | Not Available | Positive | 4001646 - 4002791 | 42295.3 |
| abc transporter, atp-binding protein | HMPREF3040_04197 | Not Available | Positive | 4002809 - 4003822 | 37061.9 |
| abc transporter, permease protein | HMPREF3040_04198 | Not Available | Positive | 4003823 - 4004764 | 34393.3 |
| abc transporter, permease protein | HMPREF3040_04199 | Not Available | Positive | 4004754 - 4005548 | 28683.5 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





