Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zinc transporter | HMPREF3040_04147 | Not Available | Positive | 3943414 - 3944397 | 36614.3 |
| atp-independent rna helicase dbpa | HMPREF3040_04149 | Not Available | Positive | 3944876 - 3946249 | 49243.8 |
| pp-loop family protein | HMPREF3040_04150 | Not Available | Negative | 3946378 - 3947313 | 35461.8 |
| universal stress family protein | HMPREF3040_04151 | Not Available | Negative | 3947489 - 3947923 | 15959.4 |
| outer membrane protein | HMPREF3040_04152 | Not Available | Negative | 3948064 - 3949197 | 41272.0 |
| pyruvate synthase | HMPREF3040_04154 | Not Available | Negative | 3949559 - 3953083 | 128841.0 |
| hypothetical protein | HMPREF3040_04155 | Not Available | Positive | 3953357 - 3953623 | 8696.44 |
| meta domain protein | HMPREF3040_04156 | Not Available | Negative | 3953620 - 3954042 | 15132.5 |
| d-lactate dehydrogenase | HMPREF3040_04157 | Not Available | Negative | 3954153 - 3955142 | 36522.8 |
| hypothetical protein | HMPREF3040_04158 | Not Available | Positive | 3955350 - 3957989 | 96842.2 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





