Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ycjx-like family, duf463 | HMPREF3040_04126 | Not Available | Positive | 3920015 - 3921412 | 52655.6 |
| tigr01620 family protein | HMPREF3040_04127 | Not Available | Positive | 3921409 - 3922470 | 39363.5 |
| sigma-54 interaction domain protein | HMPREF3040_04128 | Not Available | Positive | 3922618 - 3924159 | 57657.5 |
| redoxin family protein | HMPREF3040_04129 | Not Available | Negative | 3924203 - 3924709 | 17794.2 |
| mandelate racemase/muconate lactonizing enzyme protein | HMPREF3040_04130 | Not Available | Positive | 3924828 - 3925793 | 34591.9 |
| zinc carboxypeptidase | HMPREF3040_04131 | Not Available | Negative | 3925768 - 3926496 | 26585.5 |
| hypothetical protein | HMPREF3040_04132 | Not Available | Negative | 3926787 - 3927425 | 23339.2 |
| x-pro dipeptidyl-peptidase | HMPREF3040_04133 | Not Available | Negative | 3927496 - 3928428 | 34108.8 |
| lysr substrate binding domain protein | HMPREF3040_04134 | Not Available | Positive | 3928554 - 3929453 | 33467.8 |
| periplasmic murein peptide-binding protein | HMPREF3040_04135 | Not Available | Positive | 3929769 - 3931403 | 60763.5 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





