Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dipeptide abc transporter, permease protein dppc | HMPREF3040_03976 | Not Available | Positive | 3777000 - 3777902 | 32310.5 |
| dipeptide abc transporter, atp-binding protein dppd | HMPREF3040_03977 | Not Available | Positive | 3777913 - 3778896 | 35846.5 |
| abc transporter, atp-binding protein | HMPREF3040_03978 | Not Available | Positive | 3778893 - 3779897 | 37559.7 |
| serine transporter | HMPREF3040_03979 | Not Available | Negative | 3779927 - 3781198 | 47302.4 |
| hypothetical protein | HMPREF3040_03980 | Not Available | Positive | 3781971 - 3783341 | 51927.1 |
| hypothetical protein | HMPREF3040_03981 | Not Available | Negative | 3783595 - 3783756 | 5885.35 |
| hypothetical protein | HMPREF3040_03982 | Not Available | Positive | 3784007 - 3784210 | 7621.28 |
| outer membrane autotransporter barrel domain protein | HMPREF3040_03983 | Not Available | Positive | 3784179 - 3788536 | 150304.0 |
| hypothetical protein | HMPREF3040_03984 | Not Available | Positive | 3788537 - 3788746 | 7414.5 |
| hypothetical protein | HMPREF3040_03985 | Not Available | Positive | 3789251 - 3789589 | 12735.4 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





