Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv conjugative transfer system coupling protein trad | HMPREF3040_03935 | Not Available | Positive | 3747763 - 3749054 | 48795.4 |
| hypothetical protein | HMPREF3040_03936 | Not Available | Positive | 3749055 - 3749329 | 9459.61 |
| hypothetical protein | HMPREF3040_03937 | Not Available | Positive | 3749330 - 3750097 | 28933.1 |
| conjugal transfer entry exclusion protein tras | HMPREF3040_03938 | Not Available | Positive | 3750094 - 3750603 | 19435.7 |
| hypothetical protein | HMPREF3040_03970 | Not Available | Positive | 3772874 - 3773545 | 25630.5 |
| hypothetical protein | HMPREF3040_03971 | Not Available | Positive | 3773546 - 3773765 | 7748.43 |
| hypothetical protein | HMPREF3040_03972 | Not Available | Negative | 3773869 - 3774024 | 5916.04 |
| dipeptide abc transporter, periplasmic dipeptide-binding protein dppa | HMPREF3040_03973 | Not Available | Positive | 3774213 - 3775820 | 60280.8 |
| hypothetical protein | HMPREF3040_03975 | Not Available | Negative | 3775793 - 3776008 | 7729.3 |
| dipeptide abc transporter, permease protein dppb | HMPREF3040_03974 | Not Available | Positive | 3775971 - 3776990 | 37506.4 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





