Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_03905 | Not Available | Negative | 3718269 - 3719225 | 35862.5 |
| phospholipase d domain protein | HMPREF3040_03906 | Not Available | Negative | 3719225 - 3720466 | 47636.2 |
| endonuclease/exonuclease/phosphatase family protein | HMPREF3040_03907 | Not Available | Negative | 3720463 - 3721224 | 28791.4 |
| abc-2 type transporter | HMPREF3040_03908 | Not Available | Negative | 3721729 - 3722835 | 41568.2 |
| abc-2 type transporter | HMPREF3040_03909 | Not Available | Negative | 3722846 - 3723979 | 42062.4 |
| abc transporter, atp-binding protein | HMPREF3040_03910 | Not Available | Negative | 3723972 - 3725708 | 63139.3 |
| auxiliary transport protein, membrane fusion protein family protein | HMPREF3040_03911 | Not Available | Negative | 3725701 - 3726696 | 36287.7 |
| transcriptional regulator, tetr family | HMPREF3040_03912 | Not Available | Negative | 3726699 - 3727382 | 25438.7 |
| atp-dependent rna helicase rhle | HMPREF3040_03913 | Not Available | Positive | 3727599 - 3728963 | 49996.4 |
| hypothetical protein | HMPREF3040_03914 | Not Available | Negative | 3729043 - 3729183 | 5240.43 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





