Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr substrate binding domain protein | HMPREF3040_03637 | Not Available | Negative | 3480226 - 3481242 | 38359.0 |
| hypothetical protein | HMPREF3040_03638 | Not Available | Positive | 3481363 - 3482415 | 37045.7 |
| putative 2-oxoglutarate/malate translocator | HMPREF3040_03639 | Not Available | Positive | 3482491 - 3483924 | 51353.8 |
| aconitase domain protein | HMPREF3040_03640 | Not Available | Positive | 3484107 - 3486368 | 81435.1 |
| hypothetical protein | HMPREF3040_03641 | Not Available | Positive | 3486510 - 3486888 | 14762.8 |
| atp-dependent clp protease atp-binding subunit clpa | HMPREF3040_03642 | Not Available | Negative | 3487006 - 3489282 | 84211.9 |
| atp-dependent clp protease adaptor protein clps | HMPREF3040_03643 | Not Available | Negative | 3489313 - 3489633 | 12179.7 |
| cold shock domain protein cspd | HMPREF3040_03644 | Not Available | Positive | 3489956 - 3490180 | 7969.41 |
| macrolide export atp-binding/permease protein macb | HMPREF3040_03645 | Not Available | Negative | 3490252 - 3492198 | 70648.7 |
| macrolide-specific efflux protein maca | HMPREF3040_03646 | Not Available | Negative | 3492195 - 3493310 | 40598.3 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





