Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux abc transporter, permease protein | HMPREF3040_03514 | Not Available | Positive | 3386171 - 3388585 | 89425.6 |
| hypothetical protein | HMPREF3040_03515 | Not Available | Positive | 3388582 - 3388725 | 5539.97 |
| hypothetical protein | HMPREF3040_03516 | Not Available | Positive | 3388707 - 3388844 | 5030.26 |
| trna 2-selenouridine synthase | HMPREF3040_03517 | Not Available | Negative | 3389190 - 3390284 | 41222.2 |
| hth-type transcriptional activator alls | HMPREF3040_03518 | Not Available | Negative | 3390353 - 3391279 | 34500.6 |
| ureidoglycolate lyase | HMPREF3040_03519 | Not Available | Positive | 3391509 - 3391991 | 18223.7 |
| hth-type transcriptional repressor allr | HMPREF3040_03520 | Not Available | Positive | 3392069 - 3392884 | 29301.5 |
| glyoxylate carboligase | HMPREF3040_03521 | Not Available | Positive | 3392974 - 3394755 | 64764.5 |
| hydroxypyruvate isomerase | HMPREF3040_03522 | Not Available | Positive | 3394795 - 3395544 | 28349.8 |
| 2-hydroxy-3-oxopropionate reductase | HMPREF3040_03523 | Not Available | Positive | 3395644 - 3396522 | 30802.5 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





