Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutaminase a | HMPREF3040_03494 | Not Available | Positive | 3348230 - 3349162 | 32946.3 |
| amino acid permease | HMPREF3040_03495 | Not Available | Positive | 3349165 - 3350457 | 45645.5 |
| type i secretion outer membrane protein, tolc family | HMPREF3040_03496 | Not Available | Positive | 3350795 - 3352150 | 49285.9 |
| type 1 secretion target domain protein | HMPREF3040_03497 | Not Available | Positive | 3352259 - 3373036 | 688880.0 |
| type i secretion system atpase | HMPREF3040_03498 | Not Available | Positive | 3373040 - 3375202 | 80680.7 |
| type i secretion membrane fusion protein, hlyd family | HMPREF3040_03499 | Not Available | Positive | 3375199 - 3376374 | 43631.4 |
| cu(i)-responsive transcriptional regulator | HMPREF3040_03500 | Not Available | Positive | 3376371 - 3376778 | 15235.1 |
| hypothetical protein | HMPREF3040_03501 | Not Available | Negative | 3376782 - 3376985 | 7500.42 |
| hypothetical protein | HMPREF3040_03502 | Not Available | Negative | 3376982 - 3377404 | 15231.2 |
| outer membrane insertion signal domain protein | HMPREF3040_03503 | Not Available | Negative | 3377458 - 3379242 | 63025.7 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





