Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| toxin-antitoxin system, toxin component, gnat family | HMPREF3040_00112 | Not Available | Negative | 92697 - 93191 | 18085.1 |
| toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein | HMPREF3040_00113 | Not Available | Negative | 93188 - 93526 | 12890.7 |
| Ncrna_class:other | Not Available | Not Available | Positive | 96413 - 96592 | Not Available |
| rne rnase e | HMPREF3040_00114 | Not Available | Negative | 93614 - 96799 | 118252.0 |
| rrna pseudouridylate synthase | HMPREF3040_00115 | Not Available | Positive | 97372 - 98331 | 36014.7 |
| putative acr | HMPREF3040_00117 | Not Available | Positive | 99226 - 99747 | 19315.9 |
| ribosomal protein l32 | HMPREF3040_00118 | Not Available | Positive | 99799 - 99972 | 6446.77 |
| fatty acid/phospholipid synthesis protein plsx | HMPREF3040_00119 | Not Available | Positive | 100083 - 101123 | 37112.4 |
| Ncrna_class:other | Not Available | Not Available | Positive | 100147 - 100221 | Not Available |
| 3-oxoacyl-(acyl carrier protein) synthase iii | HMPREF3040_00120 | Not Available | Positive | 101191 - 102144 | 33547.1 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





