Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent clp endopeptidase, proteolytic subunit clpp | HMPREF3040_03442 | Not Available | Positive | 3294184 - 3294768 | 21695.4 |
| atp-dependent clp protease, atp-binding subunit clpx | HMPREF3040_03443 | Not Available | Positive | 3294894 - 3296168 | 46358.7 |
| endopeptidase la | HMPREF3040_03444 | Not Available | Positive | 3296356 - 3298710 | 87443.4 |
| dna-binding protein hu-beta | HMPREF3040_03445 | Not Available | Positive | 3298919 - 3299191 | 9226.08 |
| peptidyl-prolyl cis-trans isomerase d | HMPREF3040_03446 | Not Available | Positive | 3299383 - 3301254 | 68153.7 |
| competence protein comea helix-hairpin-helix repeat region | HMPREF3040_03447 | Not Available | Positive | 3301405 - 3301776 | 12702.3 |
| acyl-coa thioester hydrolase, ybgc/ybaw family | HMPREF3040_03448 | Not Available | Positive | 3301870 - 3302268 | 15061.1 |
| protein exsb | HMPREF3040_03449 | Not Available | Negative | 3302320 - 3303015 | 25453.5 |
| abc transporter, substrate-binding protein, family 5 | HMPREF3040_03450 | Not Available | Negative | 3303080 - 3304780 | 64925.2 |
| hmp-pp phosphatase | HMPREF3040_03451 | Not Available | Positive | 3304868 - 3305698 | 30864.3 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





