Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyrroline-5-carboxylate reductase | HMPREF3040_03382 | Not Available | Negative | 3238950 - 3239759 | 28160.6 |
| toxin-antitoxin system, toxin component, pin family | HMPREF3040_03383 | Not Available | Positive | 3239759 - 3240337 | 21930.1 |
| shikimate kinase | HMPREF3040_03384 | Not Available | Positive | 3240520 - 3241044 | 19151.9 |
| hypothetical protein | HMPREF3040_03385 | Not Available | Positive | 3241094 - 3241285 | 7281.55 |
| arom protein | HMPREF3040_03386 | Not Available | Positive | 3241543 - 3242220 | 24891.4 |
| hypothetical protein | HMPREF3040_03387 | Not Available | Positive | 3242292 - 3242576 | 10234.9 |
| hypothetical protein | HMPREF3040_03388 | Not Available | Negative | 3242680 - 3242823 | 5389.45 |
| hypothetical protein | HMPREF3040_03389 | Not Available | Positive | 3242823 - 3243065 | 9043.94 |
| recombination-associated protein rdgc | HMPREF3040_03391 | Not Available | Negative | 3243223 - 3244173 | 35453.1 |
| fructokinase | HMPREF3040_03390 | Not Available | Positive | 3244172 - 3245167 | 35810.7 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





