Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter, permease protein | HMPREF3040_03362 | Not Available | Positive | 3222238 - 3223065 | 29597.6 |
| taurine dioxygenase | HMPREF3040_03363 | Not Available | Positive | 3223062 - 3223913 | 32439.3 |
| porphobilinogen synthase | HMPREF3040_03364 | Not Available | Negative | 3223953 - 3224960 | 36812.3 |
| outer membrane autotransporter barrel domain protein | HMPREF3040_03365 | Not Available | Positive | 3225453 - 3228359 | 104991.0 |
| putative dna-binding transcriptional regulator | HMPREF3040_03366 | Not Available | Positive | 3228400 - 3229068 | 25500.0 |
| beta-lactamase | HMPREF3040_03367 | Not Available | Negative | 3229069 - 3230199 | 40889.2 |
| hypothetical protein | HMPREF3040_03368 | Not Available | Negative | 3230318 - 3230440 | 4819.88 |
| transport protein | HMPREF3040_03369 | Not Available | Positive | 3230578 - 3231798 | 46447.9 |
| hypothetical protein | HMPREF3040_03370 | Not Available | Positive | 3231811 - 3232905 | 40385.5 |
| hypothetical protein | HMPREF3040_03371 | Not Available | Negative | 3232963 - 3233271 | 11425.2 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





