Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ivb pilus formation outer membrane protein, r64 piln family | HMPREF3040_03272 | Not Available | Positive | 3141992 - 3143611 | 57538.5 |
| pilin accessory protein pilo | HMPREF3040_03273 | Not Available | Positive | 3143704 - 3144927 | 45386.0 |
| type iv pilus biogenesis protein pilp | HMPREF3040_03274 | Not Available | Positive | 3144917 - 3145375 | 16572.8 |
| type ii/iv secretion system protein | HMPREF3040_03275 | Not Available | Positive | 3145479 - 3146987 | 55987.2 |
| bacterial type ii secretion system protein f domain protein | HMPREF3040_03276 | Not Available | Positive | 3146989 - 3148083 | 41099.8 |
| prepilin-type cleavage/methylation protein | HMPREF3040_03277 | Not Available | Positive | 3148145 - 3148681 | 19085.9 |
| transglycosylase slt domain protein | HMPREF3040_03278 | Not Available | Positive | 3148726 - 3149211 | 18413.4 |
| peptidase, a24 family | HMPREF3040_03279 | Not Available | Positive | 3149353 - 3149853 | 18533.0 |
| bacterial shufflon protein, constant region | HMPREF3040_03280 | Not Available | Positive | 3149871 - 3151232 | 48894.8 |
| hypothetical protein | HMPREF3040_03282 | Not Available | Negative | 3151271 - 3151477 | 7595.16 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





