Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinate-semialdehyde dehydrogenase | HMPREF3040_03242 | Not Available | Negative | 3119711 - 3121159 | 51784.0 |
| fad dependent oxidoreductase | HMPREF3040_03243 | Not Available | Negative | 3121182 - 3122450 | 46055.6 |
| protein csid | HMPREF3040_03244 | Not Available | Negative | 3122470 - 3123447 | 37420.6 |
| hypothetical protein | HMPREF3040_03245 | Not Available | Positive | 3123476 - 3123598 | 4818.77 |
| alpha amylase, catalytic domain protein | HMPREF3040_03246 | Not Available | Negative | 3123783 - 3126035 | 85114.9 |
| phage minor tail protein l | HMPREF3040_03247 | Not Available | Negative | 3126080 - 3126693 | 22596.2 |
| phage minor tail protein | HMPREF3040_03248 | Not Available | Negative | 3126693 - 3127022 | 12500.0 |
| hypothetical protein | HMPREF3040_03249 | Not Available | Negative | 3127019 - 3127312 | 10157.0 |
| phage tail tape measure protein, lambda family | HMPREF3040_03250 | Not Available | Negative | 3127313 - 3128235 | 33253.2 |
| colicin-ia | HMPREF3040_03251 | Not Available | Negative | 3128248 - 3130128 | 69400.8 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





