Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_03232 | Not Available | Positive | 3112366 - 3112710 | 13066.5 |
| hypothetical protein | HMPREF3040_03233 | Not Available | Negative | 3112747 - 3113118 | 14056.5 |
| dna-binding protein stpa | HMPREF3040_03234 | Not Available | Positive | 3113864 - 3114268 | 15348.4 |
| rhodanese-like protein | HMPREF3040_03235 | Not Available | Negative | 3114315 - 3114839 | 18672.9 |
| transcriptional regulator, arsr family | HMPREF3040_03236 | Not Available | Negative | 3114849 - 3115148 | 10596.9 |
| hypothetical protein | HMPREF3040_03237 | Not Available | Positive | 3115331 - 3115489 | 5865.57 |
| lysm domain protein | HMPREF3040_03238 | Not Available | Positive | 3115573 - 3116022 | 16033.9 |
| fcd domain protein | HMPREF3040_03239 | Not Available | Negative | 3116023 - 3116703 | 25718.2 |
| gaba permease | HMPREF3040_03240 | Not Available | Negative | 3116706 - 3118106 | 51097.1 |
| 4-aminobutyrate transaminase | HMPREF3040_03241 | Not Available | Negative | 3118417 - 3119697 | 45667.2 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





