Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nickel-dependent hydrogenase b-type cytochrome subunit | HMPREF3040_00084 | Not Available | Negative | 70131 - 70697 | 20726.5 |
| hypothetical protein | HMPREF3040_00083 | Not Available | Positive | 70687 - 70833 | 5698.59 |
| hypothetical protein | HMPREF3040_00085 | Not Available | Negative | 70958 - 71098 | 5897.59 |
| n-methyl-l-tryptophan oxidase | HMPREF3040_00086 | Not Available | Negative | 71119 - 72237 | 40890.1 |
| biofilm formation regulatory protein bsss | HMPREF3040_00087 | Not Available | Negative | 72352 - 72609 | 9736.44 |
| hypothetical protein | HMPREF3040_00088 | Not Available | Negative | 72639 - 72776 | 5148.2 |
| dna-damage-inducible protein i | HMPREF3040_00089 | Not Available | Negative | 72896 - 73141 | 8949.43 |
| Ncrna_class:other | Not Available | Not Available | Positive | 73343 - 73456 | Not Available |
| dihydroorotase, homodimeric type | HMPREF3040_00090 | Not Available | Negative | 73215 - 74261 | 38800.6 |
| hypothetical protein | HMPREF3040_00091 | Not Available | Negative | 74367 - 74984 | 22591.4 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





