Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| delta-1-pyrroline-5-carboxylate dehydrogenase | HMPREF3040_03111 | Not Available | Negative | 3012359 - 3016321 | 143789.0 |
| hypothetical protein | HMPREF3040_03112 | Not Available | Positive | 3016376 - 3016585 | 7779.91 |
| hypothetical protein | HMPREF3040_03113 | Not Available | Positive | 3016617 - 3016754 | 5145.07 |
| sodium/proline symporter | HMPREF3040_03114 | Not Available | Positive | 3016744 - 3018252 | 54317.3 |
| hypothetical protein | HMPREF3040_03115 | Not Available | Negative | 3018400 - 3019743 | 50429.4 |
| hypothetical protein | HMPREF3040_03116 | Not Available | Negative | 3020752 - 3020898 | 5939.01 |
| putative ferrous iron permease efeu | HMPREF3040_03117 | Not Available | Positive | 3020934 - 3021764 | 30379.7 |
| imelysin | HMPREF3040_03118 | Not Available | Positive | 3021822 - 3022949 | 41111.8 |
| tat-translocated enzyme | HMPREF3040_03119 | Not Available | Positive | 3022955 - 3024226 | 46681.7 |
| hypothetical protein | HMPREF3040_03120 | Not Available | Negative | 3024341 - 3024496 | 6109.51 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





