Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_03011 | Not Available | Positive | 2926088 - 2926222 | 4654.58 |
| hypothetical protein | HMPREF3040_03012 | Not Available | Positive | 2926277 - 2926507 | 8578.41 |
| acetyltransferase, gnat family | HMPREF3040_03013 | Not Available | Positive | 2926519 - 2926791 | 10469.6 |
| hypothetical protein | HMPREF3040_03014 | Not Available | Positive | 2927110 - 2927316 | 7950.38 |
| hypothetical protein | HMPREF3040_03015 | Not Available | Positive | 2927344 - 2927517 | 6555.44 |
| lysine--trna ligase | HMPREF3040_03016 | Not Available | Negative | 2927635 - 2929152 | 57858.0 |
| amino acid/peptide transporter | HMPREF3040_03017 | Not Available | Negative | 2929389 - 2930846 | 53036.7 |
| lysine decarboxylase, inducible | HMPREF3040_03018 | Not Available | Negative | 2930905 - 2933058 | 81497.0 |
| putative arginine/agmatine antiporter | HMPREF3040_03019 | Not Available | Negative | 2933132 - 2934466 | 46667.8 |
| transcriptional regulatory protein | HMPREF3040_03020 | Not Available | Negative | 2934832 - 2936370 | 57876.2 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





