Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_00064 | Not Available | Negative | 52720 - 52968 | 9403.99 |
| carboxylate-amine ligase ybdk | HMPREF3040_00065 | Not Available | Negative | 53034 - 54152 | 41694.7 |
| hypothetical protein | HMPREF3040_00066 | Not Available | Positive | 54164 - 54340 | 6719.08 |
| hypothetical protein | HMPREF3040_00067 | Not Available | Negative | 54609 - 54983 | 14089.1 |
| hypothetical protein | HMPREF3040_00068 | Not Available | Negative | 54984 - 55202 | 7729.38 |
| hypothetical protein | HMPREF3040_00069 | Not Available | Positive | 55352 - 57345 | 72519.8 |
| macro domain protein | HMPREF3040_00070 | Not Available | Positive | 57471 - 58004 | 18901.4 |
| phospholipase d domain protein | HMPREF3040_00071 | Not Available | Positive | 57997 - 59427 | 53997.3 |
| Ncrna_class:other | Not Available | Not Available | Positive | 59988 - 60073 | Not Available |
| glucans biosynthesis protein | HMPREF3040_00072 | Not Available | Negative | 59435 - 60592 | 44733.0 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





