Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bicyclomycin resistance protein | HMPREF3040_02940 | Not Available | Negative | 2844686 - 2845819 | 41253.7 |
| 16s pseudouridylate synthase | HMPREF3040_02941 | Not Available | Negative | 2845904 - 2846599 | 25866.8 |
| helicase protein | HMPREF3040_02942 | Not Available | Positive | 2846749 - 2848509 | 66546.0 |
| ribosomal l25p family protein | HMPREF3040_02943 | Not Available | Positive | 2848634 - 2848918 | 10693.1 |
| nucleoid-associated protein ndpa | HMPREF3040_02945 | Not Available | Negative | 2849057 - 2850064 | 37825.6 |
| hypothetical protein | HMPREF3040_02944 | Not Available | Positive | 2850063 - 2850209 | 5865.22 |
| hypothetical protein | HMPREF3040_02946 | Not Available | Positive | 2850246 - 2850473 | 8288.95 |
| arylsulfatase | HMPREF3040_02947 | Not Available | Positive | 2850493 - 2852253 | 67315.9 |
| Trna-pro | Not Available | Not Available | Positive | 2852328 - 2852404 | Not Available |
| outer membrane autotransporter barrel domain protein | HMPREF3040_02949 | Not Available | Negative | 2852507 - 2855047 | 89374.9 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





