Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mannitol dehydrogenase domain protein | HMPREF3040_02930 | Not Available | Positive | 2832361 - 2833827 | 53962.7 |
| cobw/p47k family protein | HMPREF3040_02931 | Not Available | Positive | 2833945 - 2834931 | 36074.3 |
| pap2 family protein | HMPREF3040_02932 | Not Available | Positive | 2834970 - 2835683 | 26759.7 |
| nlpc/p60 family protein | HMPREF3040_02933 | Not Available | Positive | 2836095 - 2836661 | 21041.1 |
| cyclic diguanylate phosphodiesterase domain protein | HMPREF3040_02934 | Not Available | Positive | 2836842 - 2838398 | 58545.4 |
| abc transporter, substrate-binding protein, family 5 | HMPREF3040_02935 | Not Available | Positive | 2838480 - 2840294 | 69742.7 |
| abc transporter, permease protein | HMPREF3040_02936 | Not Available | Positive | 2840295 - 2841389 | 40362.6 |
| abc transporter, permease protein | HMPREF3040_02937 | Not Available | Positive | 2841389 - 2842414 | 38133.7 |
| putative phosphonate c-p lyase system protein phnk | HMPREF3040_02938 | Not Available | Positive | 2842416 - 2844005 | 58636.6 |
| hypothetical protein | HMPREF3040_02939 | Not Available | Negative | 2844009 - 2844353 | 12525.9 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





