Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative glycine cleavage system transcriptional repressor | HMPREF3040_02809 | Not Available | Positive | 2717212 - 2717658 | 16286.4 |
| thioredoxin-dependent thiol peroxidase | HMPREF3040_02810 | Not Available | Positive | 2717658 - 2718128 | 17634.9 |
| hydrogenase-4 component a | HMPREF3040_02811 | Not Available | Positive | 2718342 - 2718998 | 23655.3 |
| nadh-ubiquinone/plastoquinone family protein | HMPREF3040_02812 | Not Available | Positive | 2718998 - 2721016 | 72681.6 |
| nadh dehydrogenase | HMPREF3040_02813 | Not Available | Positive | 2721027 - 2721974 | 34387.3 |
| hydrogenase 4 subunit d | HMPREF3040_02814 | Not Available | Positive | 2721991 - 2723430 | 51757.7 |
| nadh-ubiquinone/plastoquinone oxidoreductase chain 4l | HMPREF3040_02815 | Not Available | Positive | 2723442 - 2724092 | 23393.0 |
| hydrogenase 4 subunit f | HMPREF3040_02816 | Not Available | Positive | 2724112 - 2725677 | 55999.7 |
| respiratory-chain nadh dehydrogenase, subunit | HMPREF3040_02817 | Not Available | Positive | 2725667 - 2727382 | 65072.1 |
| hydrogenase 4 subunit h | HMPREF3040_02818 | Not Available | Positive | 2727392 - 2727937 | 20144.4 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





