Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine--trna ligase | HMPREF3040_02769 | Not Available | Positive | 2664209 - 2665483 | 47060.2 |
| hypothetical protein | HMPREF3040_02770 | Not Available | Positive | 2665501 - 2666121 | 22177.2 |
| outer membrane assembly lipoprotein yfgl | HMPREF3040_02771 | Not Available | Positive | 2666132 - 2667310 | 41859.6 |
| ribosome biogenesis gtpase der | HMPREF3040_02772 | Not Available | Positive | 2667401 - 2668900 | 56089.4 |
| hypothetical protein | HMPREF3040_02773 | Not Available | Positive | 2668963 - 2669178 | 7791.46 |
| outer membrane insertion signal domain protein | HMPREF3040_02774 | Not Available | Positive | 2669388 - 2671565 | 81287.2 |
| hypothetical protein | HMPREF3040_02775 | Not Available | Positive | 2671620 - 2672597 | 34505.9 |
| hypothetical protein | HMPREF3040_02776 | Not Available | Positive | 2672718 - 2675432 | 96778.9 |
| hypothetical protein | HMPREF3040_02777 | Not Available | Positive | 2675475 - 2680760 | 187574.0 |
| exodeoxyribonuclease vii, large subunit | HMPREF3040_02778 | Not Available | Negative | 2680820 - 2682196 | 51547.9 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





