Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| had hydrolase, family if | HMPREF3040_02715 | Not Available | Positive | 2606379 - 2606993 | 23587.8 |
| cytidine and deoxycytidylate deaminase zinc-binding region | HMPREF3040_02716 | Not Available | Positive | 2607018 - 2607554 | 20073.4 |
| membrane-bound lytic murein transglycosylase f | HMPREF3040_02717 | Not Available | Negative | 2607551 - 2609107 | 58305.3 |
| hypothetical protein | HMPREF3040_02719 | Not Available | Negative | 2609108 - 2609239 | 4885.11 |
| hypothetical protein | HMPREF3040_02718 | Not Available | Positive | 2609210 - 2609350 | 5248.19 |
| phosphoribosylformylglycinamidine synthase | HMPREF3040_02720 | Not Available | Positive | 2609365 - 2613252 | 141379.0 |
| hypothetical protein | HMPREF3040_02721 | Not Available | Positive | 2613374 - 2613508 | 5013.52 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | HMPREF3040_02723 | Not Available | Positive | 2613873 - 2615255 | 51445.1 |
| hypothetical protein | HMPREF3040_02724 | Not Available | Positive | 2615420 - 2616133 | 27276.3 |
| putative response regulator/sigma54 interaction protein | HMPREF3040_02725 | Not Available | Positive | 2616123 - 2617457 | 49152.3 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





