Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| shikimate dehydrogenase | HMPREF3040_02695 | Not Available | Positive | 2588726 - 2589544 | 29410.4 |
| hypothetical protein | HMPREF3040_02696 | Not Available | Positive | 2589541 - 2589798 | 10023.5 |
| bacterial transferase hexapeptide repeat protein | HMPREF3040_02698 | Not Available | Negative | 2589774 - 2590412 | 23473.4 |
| hypothetical protein | HMPREF3040_02697 | Not Available | Positive | 2590399 - 2590521 | 4607.05 |
| atp-dependent rna helicase srmb | HMPREF3040_02699 | Not Available | Negative | 2590677 - 2592011 | 49901.0 |
| hypothetical protein | HMPREF3040_02700 | Not Available | Positive | 2592221 - 2592880 | 24254.8 |
| l-aspartate oxidase | HMPREF3040_02701 | Not Available | Negative | 2592865 - 2594487 | 60198.7 |
| hypothetical protein | HMPREF3040_02702 | Not Available | Positive | 2594743 - 2594898 | 6229.83 |
| rna polymerase sigma factor rpoe | HMPREF3040_02703 | Not Available | Positive | 2594895 - 2595470 | 21697.0 |
| sigma-e factor negative regulatory protein | HMPREF3040_02704 | Not Available | Positive | 2595503 - 2596153 | 24322.8 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





