Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_02685 | Not Available | Positive | 2580915 - 2581133 | 8171.86 |
| large conductance mechanosensitive channel protein | HMPREF3040_02686 | Not Available | Negative | 2581130 - 2581540 | 14957.7 |
| potassium transporter peripheral membrane component | HMPREF3040_02687 | Not Available | Negative | 2581670 - 2583046 | 50370.8 |
| ribosomal rna small subunit methyltransferase b | HMPREF3040_02688 | Not Available | Negative | 2583068 - 2584357 | 48281.2 |
| methionyl-trna formyltransferase | HMPREF3040_02689 | Not Available | Negative | 2584403 - 2585209 | 29153.4 |
| peptide deformylase | HMPREF3040_02690 | Not Available | Negative | 2585365 - 2585874 | 19329.6 |
| dna protecting protein dpra | HMPREF3040_02691 | Not Available | Positive | 2586004 - 2587128 | 41037.4 |
| hypothetical protein | HMPREF3040_02692 | Not Available | Positive | 2587115 - 2587573 | 17878.4 |
| topoisomerase dna-binding c4 zinc finger domain protein | HMPREF3040_02693 | Not Available | Positive | 2587602 - 2588144 | 19845.9 |
| sua5/ycio/yrdc/ywlc family protein | HMPREF3040_02694 | Not Available | Positive | 2588149 - 2588721 | 20653.8 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





