Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii subunit alpha | HMPREF3040_02625 | Not Available | Positive | 2542582 - 2546016 | 127975.0 |
| acetyl-coa carboxylase, carboxyl transferase, alpha subunit | HMPREF3040_02626 | Not Available | Positive | 2546029 - 2546988 | 35289.6 |
| lysine decarboxylase, constitutive | HMPREF3040_02627 | Not Available | Positive | 2547087 - 2549228 | 80638.9 |
| glyoxalase family protein | HMPREF3040_02628 | Not Available | Positive | 2549285 - 2549674 | 14707.4 |
| trna(ile)-lysidine synthetase | HMPREF3040_02629 | Not Available | Positive | 2549739 - 2551034 | 48063.8 |
| modulator of rho-dependent transcription termination | HMPREF3040_02630 | Not Available | Negative | 2551083 - 2551337 | 9452.15 |
| hypothetical protein | HMPREF3040_02631 | Not Available | Negative | 2551330 - 2551548 | 7779.28 |
| yaeq protein | HMPREF3040_02632 | Not Available | Positive | 2551696 - 2552241 | 20890.7 |
| peptidyl-trna hydrolase domain protein | HMPREF3040_02633 | Not Available | Positive | 2552238 - 2552660 | 15604.9 |
| lipoprotein nlpe | HMPREF3040_02634 | Not Available | Positive | 2552674 - 2553384 | 25936.8 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





