Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamyl-queuosine trna(asp) synthetase | HMPREF3040_02584 | Not Available | Negative | 2497554 - 2498480 | 34949.6 |
| rna polymerase-binding protein dksa | HMPREF3040_02585 | Not Available | Negative | 2498517 - 2498972 | 17528.7 |
| sugar fermentation stimulation protein | HMPREF3040_02586 | Not Available | Negative | 2499150 - 2499854 | 26196.2 |
| 2'-5' rna ligase | HMPREF3040_02587 | Not Available | Negative | 2499869 - 2500399 | 19932.0 |
| atp-dependent helicase hrpb | HMPREF3040_02588 | Not Available | Positive | 2500428 - 2502902 | 90782.1 |
| penicillin-binding protein 1b | HMPREF3040_02589 | Not Available | Positive | 2502996 - 2505530 | 94284.0 |
| hypothetical protein | HMPREF3040_02590 | Not Available | Negative | 2505595 - 2505729 | 5028.94 |
| ferrichrome-iron receptor fhua | HMPREF3040_02591 | Not Available | Positive | 2505750 - 2508008 | 83026.5 |
| ferrichrome abc transporter, atp-binding protein fhuc | HMPREF3040_02592 | Not Available | Positive | 2508059 - 2508856 | 28872.2 |
| ferrichrome-binding periplasmic protein fhud | HMPREF3040_02593 | Not Available | Positive | 2508856 - 2509746 | 33083.4 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





