Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_02493 | Not Available | Positive | 2405376 - 2405552 | 6718.35 |
| l-arabinose isomerase | HMPREF3040_02494 | Not Available | Negative | 2405549 - 2407051 | 56092.1 |
| ribulokinase | HMPREF3040_02495 | Not Available | Negative | 2407062 - 2408762 | 61215.8 |
| arabinose operon regulatory protein | HMPREF3040_02496 | Not Available | Positive | 2409050 - 2409979 | 35154.9 |
| snare-like domain protein | HMPREF3040_02497 | Not Available | Positive | 2410065 - 2410829 | 28171.7 |
| thiamine abc transporter, atp-binding protein | HMPREF3040_02498 | Not Available | Negative | 2410943 - 2411641 | 25001.6 |
| thiamine/thiamine pyrophosphate abc transporter, permease protein | HMPREF3040_02499 | Not Available | Negative | 2411625 - 2413235 | 59448.7 |
| thiamine/thiamine pyrophosphate abc transporter, thiamine/thiamine pyrophospate-binding protein | HMPREF3040_02500 | Not Available | Negative | 2413211 - 2414194 | 36255.2 |
| pentapeptide repeat protein | HMPREF3040_02501 | Not Available | Positive | 2414565 - 2415401 | 30975.7 |
| hypothetical protein | HMPREF3040_02502 | Not Available | Negative | 2415391 - 2415585 | 7774.84 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





