Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dctp deaminase | HMPREF3040_02382 | Not Available | Negative | 2292615 - 2293196 | 21252.4 |
| uridine kinase | HMPREF3040_02383 | Not Available | Negative | 2293288 - 2293929 | 24354.6 |
| pas domain s-box protein | HMPREF3040_02384 | Not Available | Positive | 2294247 - 2297564 | 123916.0 |
| dna-3-methyladenine glycosylase 2 | HMPREF3040_02385 | Not Available | Negative | 2297602 - 2298459 | 31656.3 |
| putative chaperone | HMPREF3040_02386 | Not Available | Positive | 2298641 - 2299945 | 47617.0 |
| hypothetical protein | HMPREF3040_02387 | Not Available | Negative | 2299958 - 2301904 | 71524.7 |
| hypothetical protein | HMPREF3040_02388 | Not Available | Positive | 2302105 - 2302566 | 17426.8 |
| hypothetical protein | HMPREF3040_02389 | Not Available | Negative | 2302631 - 2303311 | 24372.1 |
| von willebrand factor type a domain protein | HMPREF3040_02390 | Not Available | Negative | 2303389 - 2304048 | 24182.9 |
| glycine radical enzyme activase, yjjw family | HMPREF3040_02392 | Not Available | Negative | 2304475 - 2305062 | 21303.9 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





