Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exodeoxyribonuclease i | HMPREF3040_02332 | Not Available | Positive | 2238763 - 2240190 | 54535.7 |
| amino acid permease | HMPREF3040_02333 | Not Available | Negative | 2240265 - 2241551 | 46866.2 |
| lysr substrate binding domain protein | HMPREF3040_02334 | Not Available | Negative | 2241890 - 2242819 | 34171.0 |
| nad dependent epimerase/dehydratase family protein | HMPREF3040_02335 | Not Available | Negative | 2242865 - 2243689 | 29681.7 |
| hypothetical protein | HMPREF3040_02336 | Not Available | Negative | 2243819 - 2243947 | 4456.75 |
| atp phosphoribosyltransferase | HMPREF3040_02337 | Not Available | Positive | 2244312 - 2245211 | 33398.9 |
| histidinol dehydrogenase | HMPREF3040_02338 | Not Available | Positive | 2245208 - 2246521 | 46439.4 |
| histidinol-phosphate transaminase | HMPREF3040_02339 | Not Available | Positive | 2246518 - 2247588 | 39454.4 |
| histidinol-phosphatase | HMPREF3040_02340 | Not Available | Positive | 2247588 - 2248655 | 40265.3 |
| imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | HMPREF3040_02341 | Not Available | Positive | 2248655 - 2249245 | 21654.1 |
Pathways
12883 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





