Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_02155 | Not Available | Negative | 2075569 - 2075697 | 4865.97 |
| hydrogenase-2 small chain | HMPREF3040_02154 | Not Available | Positive | 2075681 - 2076799 | 39654.3 |
| 4fe-4s binding domain protein | HMPREF3040_02156 | Not Available | Positive | 2076919 - 2077788 | 32104.2 |
| putative ni/fe-hydrogenase 2 b-type cytochrome subunit | HMPREF3040_02157 | Not Available | Positive | 2077778 - 2078956 | 43604.7 |
| hydrogenase-2 large chain | HMPREF3040_02158 | Not Available | Positive | 2078953 - 2080656 | 62494.6 |
| hydrogenase expression/formation protein | HMPREF3040_02159 | Not Available | Positive | 2080656 - 2081150 | 17739.8 |
| hydrogenase-2 assembly chaperone hybe | HMPREF3040_02160 | Not Available | Positive | 2081143 - 2081631 | 17964.6 |
| hydrogenase nickel insertion protein hypa | HMPREF3040_02161 | Not Available | Positive | 2081624 - 2081965 | 12698.1 |
| hydrogenase assembly chaperone hypc/hupf | HMPREF3040_02162 | Not Available | Positive | 2081978 - 2082226 | 8808.67 |
| glutathione s-transferase protein | HMPREF3040_02163 | Not Available | Negative | 2082296 - 2083162 | 32393.4 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





