Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system effector, hcp1 family | HMPREF3040_02124 | Not Available | Positive | 2048762 - 2049241 | 18215.6 |
| hypothetical protein | HMPREF3040_02125 | Not Available | Positive | 2049244 - 2049954 | 27410.1 |
| hypothetical protein | HMPREF3040_02126 | Not Available | Positive | 2049961 - 2050293 | 13142.6 |
| sensor protein qsec | HMPREF3040_02127 | Not Available | Negative | 2050339 - 2051688 | 50362.8 |
| transcriptional regulatory protein qseb | HMPREF3040_02128 | Not Available | Negative | 2051685 - 2052344 | 24689.2 |
| tigr00156 family protein | HMPREF3040_02129 | Not Available | Positive | 2052496 - 2052888 | 14011.5 |
| transcriptional regulator, effector binding domain protein | HMPREF3040_02130 | Not Available | Positive | 2052941 - 2053423 | 17828.2 |
| putative toxin-antitoxin system, toxin component | HMPREF3040_02131 | Not Available | Positive | 2053628 - 2053924 | 11262.6 |
| zinc finger/helix-turn-helix protein | HMPREF3040_02132 | Not Available | Positive | 2053956 - 2054321 | 13590.5 |
| putative periplasmic oligopeptide-binding protein | HMPREF3040_02133 | Not Available | Positive | 2054454 - 2056061 | 60697.1 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





