Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gram-negative pili assembly chaperone domain protein | HMPREF3040_02104 | Not Available | Negative | 2032121 - 2032507 | 14754.2 |
| fimbrial usher protein | HMPREF3040_02105 | Not Available | Negative | 2032514 - 2034298 | 66290.2 |
| hypothetical protein | HMPREF3040_02106 | Not Available | Negative | 2034578 - 2035018 | 16536.0 |
| fimbrial protein | HMPREF3040_02107 | Not Available | Negative | 2035078 - 2035629 | 19495.1 |
| hypothetical protein | HMPREF3040_02108 | Not Available | Negative | 2035913 - 2036239 | 12749.4 |
| 3,4-dihydroxy-2-butanone-4-phosphate synthase | HMPREF3040_02109 | Not Available | Positive | 2036577 - 2037230 | 23354.9 |
| hypothetical protein | HMPREF3040_02110 | Not Available | Positive | 2037492 - 2037662 | 6810.31 |
| metal cation transporter, zip family | HMPREF3040_02111 | Not Available | Negative | 2037720 - 2038535 | 28137.7 |
| aromatic ring-opening dioxygenase, catalytic subunit ligb | HMPREF3040_02112 | Not Available | Positive | 2038684 - 2039424 | 27222.6 |
| glutathionylspermidine synthase | HMPREF3040_02113 | Not Available | Negative | 2039462 - 2040622 | 45028.4 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





