Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein alx | HMPREF3040_02052 | Not Available | Negative | 1982841 - 1983806 | 35911.1 |
| hypothetical protein | HMPREF3040_02053 | Not Available | Negative | 1983899 - 1984036 | 5027.42 |
| oxidoreductase, nad-binding domain protein | HMPREF3040_02054 | Not Available | Negative | 1984089 - 1985093 | 36992.2 |
| hypothetical protein | HMPREF3040_02055 | Not Available | Negative | 1985154 - 1985846 | 25481.4 |
| hypothetical protein | HMPREF3040_02056 | Not Available | Negative | 1985923 - 1986426 | 19483.7 |
| ribosomal rna large subunit methyltransferase g | HMPREF3040_02057 | Not Available | Positive | 1986511 - 1987647 | 42333.8 |
| toxin-antitoxin system, toxin component, rele family | HMPREF3040_02058 | Not Available | Positive | 1987931 - 1988245 | 12103.7 |
| dna-binding helix-turn-helix protein | HMPREF3040_02059 | Not Available | Positive | 1988242 - 1988658 | 14996.3 |
| 2,4-dienoyl-coa reductase | HMPREF3040_02060 | Not Available | Negative | 1988703 - 1990721 | 72682.5 |
| hypothetical protein | HMPREF3040_02061 | Not Available | Negative | 1990773 - 1990922 | 5297.32 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





