Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative galactarate transporter | HMPREF3040_02011 | Not Available | Positive | 1947576 - 1948910 | 49012.0 |
| 2-dehydro-3-deoxyglucarate aldolase | HMPREF3040_02012 | Not Available | Positive | 1948926 - 1949696 | 27385.6 |
| 2-hydroxy-3-oxopropionate reductase | HMPREF3040_02013 | Not Available | Positive | 1949717 - 1950616 | 31051.1 |
| glycerate kinase | HMPREF3040_02014 | Not Available | Positive | 1950632 - 1951858 | 42099.3 |
| hypothetical protein | HMPREF3040_02016 | Not Available | Positive | 1952551 - 1952679 | 4832.05 |
| hypothetical protein | HMPREF3040_02017 | Not Available | Negative | 1952838 - 1953029 | 7422.05 |
| hypothetical protein | HMPREF3040_02018 | Not Available | Negative | 1953132 - 1953968 | 31611.1 |
| hypothetical protein | HMPREF3040_02019 | Not Available | Negative | 1954047 - 1954607 | 21383.7 |
| hypothetical protein | HMPREF3040_02020 | Not Available | Positive | 1954623 - 1954760 | 5333.8 |
| dna-binding transcriptional activator tdcr | HMPREF3040_02021 | Not Available | Negative | 1954842 - 1955198 | 14034.9 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





