Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transporter, major facilitator family protein | HMPREF3040_01871 | Not Available | Negative | 1810040 - 1811323 | 45727.4 |
| glutamate:gamma-aminobutyrate antiporter | HMPREF3040_01872 | Not Available | Positive | 1811518 - 1813053 | 55050.0 |
| hypothetical protein | HMPREF3040_01873 | Not Available | Positive | 1813349 - 1814503 | 43819.7 |
| diguanylate cyclase domain protein | HMPREF3040_01874 | Not Available | Positive | 1814879 - 1816261 | 53196.8 |
| heme-regulated cyclic di-gmp, cyclic amp phosphodiesterase | HMPREF3040_01875 | Not Available | Positive | 1816262 - 1818685 | 91196.7 |
| d-ala-d-ala dipeptidase | HMPREF3040_01876 | Not Available | Positive | 1818943 - 1819524 | 21282.3 |
| dipeptide abc transporter, permease protein dppa | HMPREF3040_01877 | Not Available | Positive | 1819538 - 1821088 | 57644.2 |
| putative d,d-dipeptide transport system permease protein ddpb | HMPREF3040_01878 | Not Available | Positive | 1821132 - 1822112 | 35623.2 |
| putative d,d-dipeptide transport system permease protein ddpc | HMPREF3040_01879 | Not Available | Positive | 1822109 - 1823005 | 31959.9 |
| putative oligopeptide abc transporter, atp-binding protein oppd | HMPREF3040_01880 | Not Available | Positive | 1823002 - 1823988 | 36121.1 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





