Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Tail fiber assembly protein | HMPREF3040_04750 | Not Available | Positive | 4499451 - 4499717 | 10203.8 |
| spermidine/putrescine abc transporter, permease protein potb | HMPREF3040_04751 | Not Available | Negative | 4499949 - 4500812 | 32398.4 |
| Gp245 | HMPREF3040_04752 | Not Available | Negative | 4500796 - 4501932 | 43030.8 |
| hypothetical protein | HMPREF3040_04753 | Not Available | Negative | 4501911 - 4502126 | 8408.22 |
| Putative peptidase m20 | HMPREF3040_04754 | Not Available | Positive | 4502182 - 4503408 | 44912.0 |
| cupin family protein | HMPREF3040_04755 | Not Available | Negative | 4503457 - 4504587 | 42959.7 |
| virulence sensor histidine kinase phoq | HMPREF3040_04756 | Not Available | Negative | 4504654 - 4506114 | 55346.9 |
| Ncrna_class:antisense_rna | Not Available | Not Available | Positive | 6 - 94 | Not Available |
| regulatory protein repa | HMPREF3040_00001 | Not Available | Positive | 40 - 747 | 25583.6 |
| Ncrna_class:antisense_rna | Not Available | Not Available | Positive | 79 - 148 | Not Available |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





