Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Head-tail joining protein | HMPREF3040_04537 | Not Available | Positive | 4314965 - 4315318 | 12667.8 |
| Tail component | HMPREF3040_04538 | Not Available | Positive | 4315334 - 4315867 | 20153.1 |
| Tail component | HMPREF3040_04539 | Not Available | Positive | 4315864 - 4316259 | 14880.3 |
| Major tail protein v | HMPREF3040_04540 | Not Available | Positive | 4316267 - 4317016 | 26332.9 |
| Tail component | HMPREF3040_04541 | Not Available | Positive | 4317035 - 4317466 | 15790.7 |
| Tail component | HMPREF3040_04542 | Not Available | Positive | 4317493 - 4317906 | 15139.9 |
| Tail component | HMPREF3040_04543 | Not Available | Positive | 4317887 - 4318647 | 26597.8 |
| Qin prophage | HMPREF3040_04747 | Not Available | Positive | 4497672 - 4498087 | 13991.8 |
| Qin prophage | HMPREF3040_04748 | Not Available | Positive | 4498087 - 4498671 | 21753.3 |
| methyltransferase domain protein | HMPREF3040_04749 | Not Available | Negative | 4498726 - 4499394 | 24478.3 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





