Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase tors | HMPREF3040_01719 | Not Available | Positive | 1665561 - 1668263 | 99238.1 |
| 4fe-4s binding domain protein | HMPREF3040_01720 | Not Available | Positive | 1668346 - 1669419 | 40109.4 |
| gnsa/gnsb family protein | HMPREF3040_01721 | Not Available | Negative | 1669468 - 1669641 | 6575.99 |
| putative protein sfa | HMPREF3040_01722 | Not Available | Negative | 1669631 - 1669861 | 8727.65 |
| hypothetical protein | HMPREF3040_01723 | Not Available | Negative | 1669836 - 1669955 | 4428.42 |
| transcriptional repressor activity cuer | HMPREF3040_01724 | Not Available | Negative | 1670035 - 1670247 | 7781.14 |
| cold-shock dna-binding domain protein | HMPREF3040_01725 | Not Available | Positive | 1670533 - 1670745 | 7720.48 |
| histidine acid phosphatase | HMPREF3040_01726 | Not Available | Negative | 1670733 - 1672073 | 48639.4 |
| hypothetical protein | HMPREF3040_01727 | Not Available | Negative | 1672073 - 1672213 | 5044.28 |
| cytochrome d ubiquinol oxidase, subunit ii | HMPREF3040_01728 | Not Available | Negative | 1672228 - 1673364 | 42398.3 |
Pathways
12799 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





