Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat protein | HMPREF3040_01689 | Not Available | Positive | 1636874 - 1637947 | 41412.3 |
| hypothetical protein | HMPREF3040_01690 | Not Available | Positive | 1638102 - 1638320 | 7838.77 |
| hypothetical protein | HMPREF3040_01691 | Not Available | Negative | 1638307 - 1638636 | 12048.3 |
| hypothetical protein | HMPREF3040_01692 | Not Available | Negative | 1638760 - 1639317 | 20232.8 |
| trab pilus assembly protein | HMPREF3040_01693 | Not Available | Negative | 1639320 - 1640557 | 43654.1 |
| trak protein | HMPREF3040_01694 | Not Available | Negative | 1640557 - 1640802 | 8853.58 |
| respiratory nitrate reductase, gamma subunit | HMPREF3040_01695 | Not Available | Negative | 1641012 - 1641689 | 25484.9 |
| nitrate reductase molybdenum cofactor assembly chaperone | HMPREF3040_01696 | Not Available | Negative | 1641689 - 1642399 | 26440.3 |
| nitrate reductase, beta subunit | HMPREF3040_01697 | Not Available | Negative | 1642396 - 1643934 | 58083.6 |
| nitrate reductase, alpha subunit | HMPREF3040_01698 | Not Available | Negative | 1643931 - 1647338 | 127218.0 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





