Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, alpa family | HMPREF3040_01619 | Not Available | Positive | 1582200 - 1582385 | 7201.78 |
| hypothetical protein | HMPREF3040_01620 | Not Available | Positive | 1582407 - 1582589 | 6674.07 |
| hypothetical protein | HMPREF3040_01621 | Not Available | Positive | 1582574 - 1583155 | 21867.4 |
| phage/conjugal plasmid c-4 type zinc finger protein, trar family | HMPREF3040_01622 | Not Available | Positive | 1583145 - 1583354 | 8035.73 |
| hypothetical protein | HMPREF3040_01624 | Not Available | Negative | 1583455 - 1583613 | 5935.23 |
| hemolysin expression-modulating domain protein | HMPREF3040_01623 | Not Available | Positive | 1583597 - 1583725 | 5014.99 |
| hypothetical protein | HMPREF3040_01625 | Not Available | Negative | 1583893 - 1584033 | 5338.62 |
| hypothetical protein | HMPREF3040_01626 | Not Available | Positive | 1584294 - 1584527 | 8468.02 |
| transglycosylase slt domain protein | HMPREF3040_01627 | Not Available | Positive | 1584600 - 1585310 | 25881.6 |
| conjugal transfer protein trbc | HMPREF3040_01628 | Not Available | Positive | 1585310 - 1585603 | 10110.7 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





