Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF3040_01579 | Not Available | Negative | 1520503 - 1520805 | 11325.8 |
| outer membrane protein | HMPREF3040_01580 | Not Available | Positive | 1521404 - 1522612 | 43903.3 |
| hypothetical protein | HMPREF3040_01581 | Not Available | Negative | 1522613 - 1522996 | 14789.3 |
| hypothetical protein | HMPREF3040_01582 | Not Available | Positive | 1523040 - 1523183 | 5444.42 |
| protein in dcm-seru intergenic region | HMPREF3040_01583 | Not Available | Positive | 1523204 - 1524055 | 31178.1 |
| heavy metal sensor kinase | HMPREF3040_01584 | Not Available | Negative | 1524163 - 1525521 | 50788.7 |
| transcriptional activator protein irlr | HMPREF3040_01585 | Not Available | Negative | 1525521 - 1526303 | 29472.5 |
| hydroxyisourate hydrolase | HMPREF3040_01586 | Not Available | Positive | 1526325 - 1526738 | 15537.6 |
| tat pathway signal sequence domain protein | HMPREF3040_01587 | Not Available | Positive | 1526847 - 1527851 | 37332.8 |
| ferric reductase like transmembrane component | HMPREF3040_01588 | Not Available | Positive | 1527852 - 1528487 | 24068.7 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





