Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | JPH493 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1295780 bp
Thymine Count
1293439 bp
Guanine Count
1334851 bp
Cytosine Count
1317027 bp
Genome Length
5241097 bp
Protein-coding Genes
5329 genes
Non-Coding Genes
292 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xanthine permease | HMPREF3040_01294 | Not Available | Positive | 1259379 - 1260896 | 54374.6 |
| hypothetical protein | HMPREF3040_01295 | Not Available | Positive | 1260886 - 1261023 | 5245.83 |
| isopentenyl-diphosphate delta-isomerase | HMPREF3040_01296 | Not Available | Positive | 1261146 - 1261694 | 20322.1 |
| lysine--trna ligase | HMPREF3040_01297 | Not Available | Negative | 1261737 - 1263254 | 57606.8 |
| peptide chain release factor 2 | HMPREF3040_01298 | Not Available | Negative | 1263264 - 1264145 | 32850.3 |
| hypothetical protein | HMPREF3040_01299 | Not Available | Positive | 1264146 - 1264301 | 5803.18 |
| single-stranded-dna-specific exonuclease recj | HMPREF3040_01300 | Not Available | Negative | 1264453 - 1266186 | 63348.6 |
| protein disulfide isomerase ii | HMPREF3040_01301 | Not Available | Negative | 1266192 - 1266902 | 25637.1 |
| tyrosine recombinase xerd | HMPREF3040_01302 | Not Available | Negative | 1266927 - 1267823 | 34222.3 |
| flavodoxin | HMPREF3040_01303 | Not Available | Positive | 1267935 - 1268456 | 19701.2 |
Pathways
12367 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





